RaNo_Syx18

Sequence Information

Short name: RaNo_Syx18
Aliases: Stx18
Species: Rattus norvegicus
Status: live
dbxref: NP_001012151.1
Source database: NCBI_refseq
Foreign annotation: gi|58865874|ref|NP_001012151.1| syntaxin 18 (predicted,') [Rattus norvegicus]

Taxonomy Information

clade: Muroidea
kingdom: Metazoa
phylum: Chordata
order: Rodentia
family: Muridae
genus: Rattus
Aminoacid sequence:
Protein Layout

Motif Data

Domain: Habc E-value: 1.3E-36 Hmm-Model/Domaingroup: Ha.I Position: 46-173 (length: 128) Method: hmm
Aminoacid sequence with motif:
MAVDITLLFRASVKTVKTRNKALGVAVGGGADGSRDELFRRSPRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCKDAIQQLRTEAHKEIHSQQVKEHRTAVLDFVEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAESQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQETEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS
Hmm-Consensus:
Similarity:
Found Motif:
r d a F l k e A r e i l r n I t e L r r f L r e h r k a Y l s l g d h l s g a g s k m t d e E R D e i D a e v k s f l k q c s s s I d a L r s a i v s r k s g s r a t p r e l f e e t q v a H r s g V l l i L e e r L k a v s k i f s e l q e t R l q r a l e k s k s l l l s q d s
+ F + + A r e + + + + I + + L r + f L e h r k Y + + + h + + + + + m t d E R D + i D + + + f + + + c + + I + + L r + + + + e + + + + + + H r + V l + + + e + + L k v + k + + s e + + + + R + + r + + k + + + + + l +
K G D F S S R A R E V I S H I G K L R D F L L E H R K E Y I N A Y S H T M S E Y G R M T D T E R D Q I D Q D A Q I F M R T C K D A I Q Q L R T E A - - - H K - - - - - - - E I H S Q Q V K E H R T A V L D F V E D Y L K R V C K L Y S E Q R A I R V K R V V D K K R L S K L E P E P
Domain: SNARE E-value: 3.2E-33 Hmm-Model/Domaingroup: Qa.I.Syx18.Metazoa Position: 252-304 (length: 53) Method: hmm
Aminoacid sequence with motif:
MAVDITLLFRASVKTVKTRNKALGVAVGGGADGSRDELFRRSPRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCKDAIQQLRTEAHKEIHSQQVKEHRTAVLDFVEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAESQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQETEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS
Hmm-Consensus:
Similarity:
Found Motif:
v r q I E g k v v e I s r L q e i F t E k v l e Q e k d I d r I h e t v v g t t e n i k e G N e q I R e A
v r q I E g k v v e I s r L q e i F t E k v l + Q e + + I d + I h + + v v g + t e n i k e G N e + I R e A
V R Q I E G K V V E I S R L Q E I F T E K V L Q Q E T E I D S I H Q L V V G A T E N I K E G N E D I R E A